Registry Plant Trait Ontology

Suggest

Logo for Plant Trait Ontology A controlled vocabulary to describe phenotypic traits in plants.

Prefix: to
Preferred Prefix: TO
Keywords: botany life cycle obo ontology phenotype plant structure trait
Version: 2023-07-17
License: CC-BY-4.0
Links: Homepage Repository OBO OWL
Contact: Pankaj Jaiswal 0000-0002-1005-8383 jaiswalp
Pattern for Local Unique Identifiers: Local identifiers in Plant Trait Ontology should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0000630 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Plant Trait Ontology should match this regular expression:
^TO:\d{7}$
Example CURIE: TO:0000630
Publications: 2018 The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

Ontology

A summary of the relations in the Bioregistry schema can be found here.

Appears In (1) (bioregistry.schema:0000018 ): AGRO

Metaregistry Plant Trait Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`TO`
AgroPortal	`agroportal`	`TO`
BioContext	`biocontext`	`TO`
BioPortal	`bioportal`	`PTO`
FAIRSharing	`fairsharing`	`FAIRsharing.w69t6r`
OBO Foundry	`obofoundry`	`to`
OLS	`ols`	`to`
OntoBee	`ontobee`	`TO`
Prefix Commons	`prefixcommons`	`pto`

RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/TO_$1

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE TO:0000630 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Plant Trait Ontology	`to`	http://purl.obolibrary.org/obo/TO_0000630
Plant Trait Ontology (RDF)	`rdf`	http://purl.obolibrary.org/obo/TO_0000630
Bioregistry	`bioregistry`	https://bioregistry.io/to:0000630
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/TO_0000630
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols4/ontologies/to/terms?iri=http://purl.obolibrary.org/obo/TO_0000630
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/PTO/?p=classes&conceptid=http://purl.obolibrary.org/obo/TO_0000630

Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code	Name	URL
`bio2rdf`	Bio2RDF	http://bio2rdf.org/pto:0000630

Get the version:

>>> import bioregistry as br
>>> br.get_version("to")
'2023-07-17'

Get the license:

>>> import bioregistry as br
>>> br.get_license("to")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("to")
'http://browser.planteome.org/amigo'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("to")
'https://github.com/Planteome/plant-trait-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("to")
'http://purl.obolibrary.org/obo/to.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("to")
'http://purl.obolibrary.org/obo/to.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("to")
'Pankaj Jaiswal'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("to")
'jaiswalp@science.oregonstate.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("to")
'jaiswalp'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("to")
'0000-0002-1005-8383'