Logo for WikiPathways

WikiPathways is a database of biological pathways maintained by and for the scientific community.

Prefix
wikipathways
Keywords
biological regulation drug interaction epidemiology genetic interaction molecular interaction pathway pathway model protein interaction reaction data signaling virology
License
CC0-1.0
Links
Homepage @wikipathways@fosstodon.org
Contact
Egon Willighagen   0000-0001-7542-0286   egonw
Pattern for Local Unique Identifiers

Local identifiers in WikiPathways should match this regular expression:
^WP\d{1,5}(\_r\d+)?$

Example Local Unique Identifier
WP732   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from WikiPathways should match this regular expression:
^wikipathways:WP\d{1,5}(\_r\d+)?$

Example CURIE
wikipathways:WP732
Publications
Contributors
Metaregistry WikiPathways

The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for this resource with 7 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext WIKIPATHWAYS
EDAM EDAM Ontology logo edam 3952
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.g7b4rj
Integbio Integbio logo integbio nbdc02116
Identifiers.org Identifiers.org logo miriam wikipathways
N2T Name-to-Thing logo n2t wikipathways
Pathguide Pathguide logo pathguide 237
Prefix Commons Prefix Commons logo prefixcommons wikipathways
re3data Registry of Research Data Repositories logo re3data r3d100013316
TogoID togoid Wikipathways
Wikidata Wikidata Property logo wikidata P2410
RDF Information

When using this resource in RDF, the following URI format should be used:

http://identifiers.org/wikipathways/$1

Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier WP732 is used to demonstrate the providers available for WikiPathways. A guide for curating additional providers can be found here.

Name Metaprefix URI
WikiPathways wikipathways http://www.wikipathways.org/instance/WP732
WikiPathways (RDF) rdf http://identifiers.org/wikipathways/WP732
Bioregistry bioregistry https://bioregistry.io/wikipathways:WP732
Identifiers.org miriam https://identifiers.org/wikipathways:WP732
Name-to-Thing n2t https://n2t.net/wikipathways:WP732
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/wikipathways:WP732
scholia Scholia https://scholia.toolforge.org/wikipathways/WP732