TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc.

Prefix

treebase

Keywords

classification phylogenetics phylogenomics

Links

Homepage Repository

Contact

Rutger Vos   0000-0001-9254-7318   rvosa

Pattern for Local Unique Identifiers

Local identifiers in TreeBASE should match this regular expression:
^TB[1,2]?:[A-Z][a-z]?\d+$

Example Local Unique Identifier

TB2:S1000   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from TreeBASE should match this regular expression:
^treebase:TB[1,2]?:[A-Z][a-z]?\d+$

Example CURIE

treebase:TB2:S1000

Publications

2009 Improved data retrieval from TreeBASE via taxonomic and linguistic data enrichment

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier TB2:S1000 is used to demonstrate the providers available for TreeBASE. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.