Registry IMGT/HLA human major histocompatibility complex sequence database

IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature.

Prefix
imgt.hla
Alternative Prefixes
IPD-IMGT/HLA
Keywords
biomedical science dna immunogenetics immunology protein rna
Links
Homepage
Contact
Steven G. E. Marsh   0000-0003-2855-4120
Identifier Space Owner
European Bioinformatics Institute
Pattern for Local Unique Identifiers

Local identifiers in IMGT/HLA human major histocompatibility complex sequence database should match this regular expression:
^[A-Z0-9*:]+$

Example Local Unique Identifier
A*01:01:01:01   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from IMGT/HLA human major histocompatibility complex sequence database should match this regular expression:
^imgt\.hla:[A-Z0-9*:]+$

Example CURIE
imgt.hla:A*01:01:01:01
Publications
Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection
FHIR External Terminologies
Metaregistry IMGT/HLA human major histocompatibility complex sequence database

The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for this resource with 9 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext IMGT.HLA
Cellosaurus Cellosaurus Registry logo cellosaurus IPD-IMGT/HLA
EDAM EDAM Ontology logo edam 2773
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.e28v7g
GO Gene Ontology Registry logo go IMGT_HLA
Integbio Integbio logo integbio nbdc00106
Identifiers.org Identifiers.org logo miriam imgt.hla
N2T Name-to-Thing logo n2t imgt.hla
NCBI National Center for Biotechnology Information Registry logo ncbi IMGT/HLA
Prefix Commons Prefix Commons logo prefixcommons imgthla
re3data Registry of Research Data Repositories logo re3data r3d100010804
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE imgt.hla:A*01:01:01:01 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
IMGT/HLA human major histocompatibility complex sequence database imgt.hla https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?A*01:01:01:01
Bioregistry bioregistry https://bioregistry.io/imgt.hla:A*01:01:01:01
Identifiers.org miriam https://identifiers.org/imgt.hla:A*01:01:01:01
Name-to-Thing n2t https://n2t.net/imgt.hla:A*01:01:01:01
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/imgthla:A*01:01:01:01