GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links.

Prefix

glycomedb

Keywords

life science molecules small molecules structure

Links

Homepage

Contact

René Ranzinger   0000-0003-3147-448X   ReneRanzinger

Pattern for Local Unique Identifiers

Local identifiers in GlycomeDB should match this regular expression:
^\w+$

Example Local Unique Identifier

G77500AY   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from GlycomeDB should match this regular expression:
^glycomedb:\w+$

Example CURIE

glycomedb:G77500AY

Publications

• 2010 GlycomeDB--a unified database for carbohydrate structures
• 2009 Glycome-DB.org: a portal for querying across the digital world of carbohydrate sequences
• 2008 GlycomeDB - integration of open-access carbohydrate structure databases

A summary of the relations in the Bioregistry schema can be found here.

Has URI collision with (bioregistry.schema:0000016 )

This resource shares one or more URI format strings with glytoucan .

Therefore, when generating an extended prefix map, glycomedb, its CURIE prefix synonyms, and its URI prefix synonyms are merged into the record for glytoucan . If you believe that these are two distinct semantic spaces and should not be merged, please open a new issue on the Bioregistry issue tracker for discussion.

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 5 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier G77500AY is used to demonstrate the providers available for GlycomeDB. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.