GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products.
- Prefix
genefarm- Keywords
- expression genome nucleotide sequence
- Links
- Homepage
- Publications
- 2005 GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in GeneFarm should match this regular expression:
^\d+$ - Example Local Unique Identifier
- 4892 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from GeneFarm should match this regular expression:
^genefarm:\d+$ - Example CURIE
- genefarm:4892
Contacts
- Contact
-
sébastien Aubourg
0000-0002-0695-4767
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
GENEFARM
|
|
Identifiers.org
|
miriam |
genefarm
|
|
N2T
|
n2t |
genefarm
|
|
Prefix Commons
|
prefixcommons |
genefarm
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 4892 is used to demonstrate the providers
available for GeneFarm. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| GeneFarm | genefarm |
https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=4892 |
| Bioregistry | bioregistry |
https://bioregistry.io/genefarm:4892 |
| Identifiers.org | miriam |
https://identifiers.org/genefarm:4892 |
| Name-to-Thing | n2t |
https://n2t.net/genefarm:4892 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/genefarm:4892 |