The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene.
- Prefix
genecards- Keywords
- genetics genome life science transcriptomics
- Links
- Homepage
- Contact
- Marilyn Safran 0000-0001-5424-1393
- Pattern for Local Unique Identifiers
-
Local identifiers in GeneCards should match this regular expression:
^[A-Za-z-0-9_]+(\@)?$ - Example Local Unique Identifier
- ABL1 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from GeneCards should match this regular expression:
^genecards:[A-Za-z-0-9_]+(\@)?$ - Example CURIE
- genecards:ABL1
- Publications
-
- 1997 GeneCards: integrating information about genes, proteins and diseases
- 2016 VarElect: the phenotype-based variation prioritizer of the GeneCards Suite
- 2016 The GeneCards Suite: From Gene Data Mining to Disease Genome Sequence Analyses
- 2016 Genic insights from integrated human proteomics in GeneCards
- 2016 GeneAnalytics: An Integrative Gene Set Analysis Tool for Next Generation Sequencing, RNAseq and Microarray Data
- 2015 PathCards: multi-source consolidation of human biological pathways
- 2010 GeneCards Version 3: the human gene integrator
- 2002 GeneCards 2002: towards a complete, object-oriented, human gene compendium
- GeneCards: integrating information about genes, proteins and diseases.
Metaregistry GeneCards
The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 5 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
GENECARDS
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.g7jbvn
|
|
Integbio
|
integbio |
nbdc00242
|
|
Identifiers.org
|
miriam |
genecards
|
|
N2T
|
n2t |
genecards
|
|
Prefix Commons
|
prefixcommons |
genecards
|
|
re3data
|
re3data |
r3d100012015
|
|
UniProt
|
uniprot |
DB-0030
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier ABL1 is used to demonstrate the providers
available for GeneCards. A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| GeneCards | genecards |
https://www.genecards.org/cgi-bin/carddisp.pl?gene=ABL1 |
| Bioregistry | bioregistry |
https://bioregistry.io/genecards:ABL1 |
| Identifiers.org | miriam |
https://identifiers.org/genecards:ABL1 |
| Name-to-Thing | n2t |
https://n2t.net/genecards:ABL1 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/genecards:ABL1 |