ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.

Prefix

mge

Alternative Prefixes

aclame

Keywords

dna gene genome genome/gene ontology/terminology/nomenclature protein

Links

Homepage

Publications

2009 ACLAME: a CLAssification of Mobile genetic Elements, update 2010

https://bioregistry.io/pubmed:18238785

https://bioregistry.io/pubmed:18234706

https://bioregistry.io/pubmed:17614261

https://bioregistry.io/pubmed:17482656

https://bioregistry.io/pubmed:17064288

2004 ACLAME: a CLAssification of Mobile genetic Elements

Pattern for Local Unique Identifiers

Local identifiers in Aclame should match this regular expression:
^\d+$

Example Local Unique Identifier

2   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Aclame should match this regular expression:
^mge:\d+$

Example CURIE

mge:2

MIRIAM Namespace Embedded in LUI

The legacy MIRIAM standard for generating CURIEs with this resource annotates the namespaceEmbeddedInLUI as true. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For , the banana looks like mge:. Therefore, you may see local unique identifiers for this resource that look like mge:2 (instead of the canonical form 2) and CURIEs for this resource that look like mge:mge:2 (instead of the canonical form mge:2). The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.

Contact

Missing Contact

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 6 mappings to external registries with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 2 is used to demonstrate the providers available for Aclame. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.