MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides

Prefix

matrixdb

Keywords

carbohydrate interaction interaction/pathway metabolite protein psi-mi small molecule

License

http://dip.doe-mbi.ucla.edu/dip/termsofuse.html

Links

Homepage

Publications

2019 MatrixDB: integration of new data with a focus on glycosaminoglycan interactions

2014 MatrixDB, the extracellular matrix interaction database: updated content, a new navigator and expanded functionalities

2010 MatrixDB, the extracellular matrix interaction database

https://bioregistry.io/pubmed:20213321

2009 MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions

Pattern for Local Unique Identifiers

Missing LUI pattern

Example Local Unique Identifier

MULT_4_VAR1_bovine   Resolve

Example CURIE

matrixdb:MULT_4_VAR1_bovine

Contact

Sylvie Ricard-Blum   0000-0001-9263-1851   ricardblum

Contributors

submitter Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

contributor Sucharitha Balu   0000-0001-7456-0594   CP-SB

A summary of the relations in the Bioregistry schema can be found here.

Appears In (1)

complexportal

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier MULT_4_VAR1_bovine is used to demonstrate the providers available for MatrixDB. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.