appears_in:
- complexportal
contact:
  email: sylvie.ricard-blum@univ-lyon1.fr
  github: ricardblum
  name: Sylvie Ricard-Blum
  orcid: 0000-0001-9263-1851
contributor:
  email: cthoyt@gmail.com
  github: cthoyt
  name: Charles Tapley Hoyt
  orcid: 0000-0003-4423-4370
contributor_extras:
- email: sbalu@ebi.ac.uk
  github: CP-SB
  name: Sucharitha Balu
  orcid: 0000-0001-7456-0594
depends_on: []
deprecated: false
description: MatrixDB is a freely available database focused on interactions established
  by extracellular matrix proteins, proteoglycans and polysaccharides
example: MULT_4_VAR1_bovine
example_extras: []
homepage: http://matrixdb.univ-lyon1.fr/
keywords:
- carbohydrate
- interaction
- interaction/pathway
- metabolite
- protein
- psi-mi
- small molecule
mappings:
  integbio: nbdc01222
  pathguide: '298'
  prefixcommons: matrixdb
  re3data: r3d100010672
name: MatrixDB
namespace_in_lui: false
preferred_prefix: matrixdb
prefix: matrixdb
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/matrixdb:$1
publications:
- doi: 10.1093/nar/gky1035
  pmc: PMC6324007
  pubmed: '30371822'
  title: 'MatrixDB: integration of new data with a focus on glycosaminoglycan interactions'
  year: 2019
- doi: 10.1093/nar/gku1091
  pmc: PMC4383919
  pubmed: '25378329'
  title: 'MatrixDB, the extracellular matrix interaction database: updated content,
    a new navigator and expanded functionalities'
  year: 2014
- doi: 10.1093/nar/gkq830
  pmc: PMC3013758
  pubmed: '20852260'
  title: MatrixDB, the extracellular matrix interaction database
  year: 2010
- pubmed: '20213321'
- doi: 10.1093/bioinformatics/btp025
  pmc: PMC2647840
  pubmed: '19147664'
  title: MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate
    interactions
  year: 2009
synonyms: []
uri_format: http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1
