Registry KEGG Reaction

Suggest

KEGG reaction contains our knowledge on the universe of reactions that are relevant to life.

Prefix: kegg.reaction
Alternative Prefixes: KEGG_REACTION
Keywords: chemical structure classification enzyme interaction/pathway pathway protein rna
Links: Homepage
Publications: 2012 Using the KEGG database resource; https://bioregistry.io/pubmed:20435670; https://bioregistry.io/pubmed:19477985; https://bioregistry.io/pubmed:17516640; https://bioregistry.io/pubmed:15600352; https://bioregistry.io/pubmed:14505407

Identifier Standards

Pattern for Local Unique Identifiers: Local identifiers in KEGG Reaction should match this regular expression:
^R\d+$
Example Local Unique Identifier: R00100 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from KEGG Reaction should match this regular expression:
^kegg\.reaction:R\d+$
Example CURIE: kegg.reaction:R00100

Contacts

Contact: Minoru Kanehisa 0000-0001-6123-540X

Ontology

A summary of the relations in the Bioregistry schema can be found here.

Part Of (bfo:0000050 ): kegg
In Collection (1): Synapse.org external links

Mappings to External Registries

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 7 mappings to external registries with 4 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
BioContext	`biocontext`	`KEGG.REACTION`
EDAM	`edam`	`2608`
GO	`go`	`KEGG_REACTION`
Integbio	`integbio`	`nbdc00818`
Identifiers.org	`miriam`	`kegg.reaction`
N2T	`n2t`	`kegg.reaction`
Prefix Commons	`prefixcommons`	`kegg.reaction`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier R00100 is used to demonstrate the providers available for KEGG Reaction. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
KEGG Reaction	`kegg.reaction`	https://www.kegg.jp/entry/R00100
Bioregistry	`bioregistry`	https://bioregistry.io/kegg.reaction:R00100
Identifiers.org	`miriam`	https://identifiers.org/kegg.reaction:R00100
Name-to-Thing	`n2t`	https://n2t.net/kegg.reaction:R00100

Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Provider Name	Provider Code	URL
Bio2RDF	`bio2rdf`	http://bio2rdf.org/kegg.reaction:R00100

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("KEGG_REACTION")
'kegg.reaction'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("kegg.reaction")
{'KEGG_REACTION'}

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("kegg.reaction")
'KEGG Reaction'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("kegg.reaction")
'https://www.genome.jp/kegg/reaction/'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("kegg.reaction")
'Minoru Kanehisa'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("kegg.reaction")
'kanehisa@kuicr.kyoto-u.ac.jp'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("kegg.reaction")
'0000-0001-6123-540X'