The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.
- Prefix
gpmdb- Links
- Homepage
- Publications
- 2004 Open source system for analyzing, validating, and storing protein identification data
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in Global Proteome Machine Database should match this regular expression:
^GPM\d+$ - Example Local Unique Identifier
- GPM32310002988 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Global Proteome Machine Database should match this regular expression:
^gpmdb:GPM\d+$ - Example CURIE
- gpmdb:GPM32310002988
Contacts
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 3 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
GPMDB
|
|
Identifiers.org
|
miriam |
gpmdb
|
|
N2T
|
n2t |
gpmdb
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier GPM32310002988 is used to demonstrate the providers
available for Global Proteome Machine Database. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Global Proteome Machine Database | gpmdb |
http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32310002988 |
| Bioregistry | bioregistry |
https://bioregistry.io/gpmdb:GPM32310002988 |
| Identifiers.org | miriam |
https://identifiers.org/gpmdb:GPM32310002988 |
| Name-to-Thing | n2t |
https://n2t.net/gpmdb:GPM32310002988 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| GPMDB through OmicsDI | omicsdi |
https://www.omicsdi.org/dataset/gpmdb/GPM32310002988 |