The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions
dip
Local identifiers in Database of Interacting Proteins should match this
regular expression:
^DIP(\:)?\-\d{1,}[ENXS]$
Compact URIs (CURIEs) constructed from Database of Interacting Proteins should match
this regular expression:
^dip:DIP(\:)?\-\d{1,}[ENXS]$
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 9 mappings to external registries with 6 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
DIP
|
|
|
EDAM
|
edam |
2616
|
|
Integbio
|
integbio |
nbdc00049
|
|
Identifiers.org
|
miriam |
dip
|
|
N2T
|
n2t |
dip
|
|
Pathguide
|
pathguide |
3
|
|
|
Prefix Commons
|
prefixcommons |
dip
|
|
re3data
|
re3data |
r3d100010670
|
|
|
UniProt
|
uniprot |
DB-0016
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier DIP-743N is used to demonstrate the providers
available for Database of Interacting Proteins. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Database of Interacting Proteins | dip |
https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=DIP-743N |
| Bioregistry | bioregistry |
https://bioregistry.io/dip:DIP-743N |
| Identifiers.org | miriam |
https://identifiers.org/dip:DIP-743N |
| Name-to-Thing | n2t |
https://n2t.net/dip:DIP-743N |
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/dip:DIP-743N |