Website with general information about Arabidopsis and functionalities such as a genomic viewer
- Prefix
araport- Keywords
- dna expression genome/gene interaction/pathway organism-specific databases portal protein rna sequence
- Links
- Homepage
- Publications
- https://bioregistry.io/pubmed:28013278
- https://bioregistry.io/pubmed:27862469
- 2014 Araport: the Arabidopsis information portal
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in Arabidopsis Information Portal should match this regular expression:
^AT.G[0-9]{5}$ - Example Local Unique Identifier
- AT5G05330 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Arabidopsis Information Portal should match this regular expression:
^araport:AT.G[0-9]{5}$ - Example CURIE
- araport:AT5G05330
Contacts
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 5 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
Integbio
|
integbio |
nbdc02433
|
|
Identifiers.org
|
miriam |
tair.name
|
|
NCBI
|
ncbi |
Araport
|
|
Pathguide
|
pathguide |
768
|
|
UniProt
|
uniprot |
DB-0221
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier AT5G05330 is used to demonstrate the providers
available for Arabidopsis Information Portal. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Arabidopsis Information Portal | araport |
https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G05330 |
| Bioregistry | bioregistry |
https://bioregistry.io/araport:AT5G05330 |
| Identifiers.org | miriam |
https://identifiers.org/tair.name:AT5G05330 |