The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast).
- Prefix
ymdb- Links
- Homepage
- Publications
- 2011 YMDB: the Yeast Metabolome Database
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in Yeast Metabolome Database should match this regular expression:
^YMDB\d+$ - Example Local Unique Identifier
- YMDB00001 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Yeast Metabolome Database should match this regular expression:
^ymdb:YMDB\d+$ - Example CURIE
- ymdb:YMDB00001
Contacts
- Contact
-
David S. Wishart
0000-0002-3207-2434
DavidWishartLab
- Contributors
-
submitter
Charles Tapley Hoyt
0000-0003-4423-4370
cthoyt
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection (1)
- ChEBI Data Sources
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 2 mappings to external registries with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
Pathguide
|
pathguide |
388
|
|
re3data
|
re3data |
r3d100012733
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier YMDB00001 is used to demonstrate the providers
available for Yeast Metabolome Database. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Yeast Metabolome Database | ymdb |
http://www.ymdb.ca/compounds/YMDB00001 |
| Bioregistry | bioregistry |
https://bioregistry.io/ymdb:YMDB00001 |