The UCSC Genome Browser is an on-line, and downloadable, genome browser hosted by the University of California, Santa Cruz (UCSC).[2][3][4] It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations.
- Prefix
ucsc- Keywords
- genome annotation databases
- Links
- Homepage
- Publications
- https://bioregistry.io/pubmed:39460617
- 2019 The UCSC Genome Browser database: 2019 update
Identifier Standards
- Pattern for Local Unique Identifiers
- Missing LUI pattern
- Example Local Unique Identifier
- uc001rvw.5 Resolve
- Example CURIE
- ucsc:uc001rvw.5
Contacts
- Contact
-
Maximilian Haeussler
0000-0001-8721-8253
maximilianh
- Contributors
-
submitter
Charles Tapley Hoyt
0000-0003-4423-4370
cthoyt
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection (1)
- Global Biodata Coalition - Global Core Biodata Resources
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 3 mappings to external registries with 3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
UCSC
|
|
UniProt
|
uniprot |
DB-0139
|
|
Wikidata
|
wikidata |
P2576
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier uc001rvw.5 is used to demonstrate the providers
available for UCSC Genome Browser. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| UCSC Genome Browser | ucsc |
ftp://hgdownload.cse.ucsc.edu/goldenPath/uc001rvw.5 |
| Bioregistry | bioregistry |
https://bioregistry.io/ucsc:uc001rvw.5 |