TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc.

Prefix
treebase
Keywords
classification phylogenetics phylogenomics
Links
Homepage Repository
Contact
Rutger Vos   0000-0001-9254-7318   rvosa
Pattern for Local Unique Identifiers

Local identifiers in TreeBASE should match this regular expression:
^TB[1,2]?:[A-Z][a-z]?\d+$

Example Local Unique Identifier
TB2:S1000   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from TreeBASE should match this regular expression:
^treebase:TB[1,2]?:[A-Z][a-z]?\d+$

Example CURIE
treebase:TB2:S1000
Publications
2009 Improved data retrieval from TreeBASE via taxonomic and linguistic data enrichment
Metaregistry TreeBASE

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext TREEBASE
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.zcn4w4
Integbio Integbio logo integbio nbdc01882
Identifiers.org Identifiers.org logo miriam treebase
N2T Name-to-Thing logo n2t treebase
Prefix Commons Prefix Commons logo prefixcommons treebase
re3data Registry of Research Data Repositories logo re3data r3d100010170
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier TB2:S1000 is used to demonstrate the providers available for TreeBASE. A guide for curating additional providers can be found here.

Name Metaprefix URI
TreeBASE treebase http://purl.org/phylo/treebase/phylows/study/TB2:S1000?format=html
Bioregistry bioregistry https://bioregistry.io/treebase:TB2:S1000
Identifiers.org miriam https://identifiers.org/treebase:TB2:S1000
Name-to-Thing n2t https://n2t.net/treebase:TB2:S1000
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/treebase:TB2:S1000