Logo for Sol Genomics Network

The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant.

Prefix
sgn
Keywords
cdna/est expression genome genome/gene method pathway phenotype plant repository sequence small molecule
Links
Homepage
Publications
2014 The Sol Genomics Network (SGN)--from genotype to phenotype to breeding
2010 The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl
Identifier Standards
Pattern for Local Unique Identifiers

Local identifiers in Sol Genomics Network should match this regular expression:
^\d+$

Example Local Unique Identifier
0001   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Sol Genomics Network should match this regular expression:
^sgn:\d+$

Example CURIE
sgn:0001
Mappings to External Registries

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 9 mappings to external registries with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext SGN
GO Gene Ontology Registry logo go SGN
Integbio Integbio logo integbio nbdc02414
Identifiers.org Identifiers.org logo miriam sgn
N2T Name-to-Thing logo n2t sgn
NCBI National Center for Biotechnology Information Registry logo ncbi SGN
Pathguide Pathguide logo pathguide 433
Prefix Commons Prefix Commons logo prefixcommons sgn
re3data Registry of Research Data Repositories logo re3data r3d100012078
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0001 is used to demonstrate the providers available for Sol Genomics Network. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name Provider Code URI
Sol Genomics Network sgn http://solgenomics.net/phenome/locus_display.pl?locus_id=0001
Bioregistry bioregistry https://bioregistry.io/sgn:0001
Identifiers.org miriam https://identifiers.org/sgn:0001
Name-to-Thing n2t https://n2t.net/sgn:0001
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Provider Name Provider Code URL
Bio2RDF bio2rdf http://bio2rdf.org/sgn:0001