Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD).
- Prefix
sgd.pathways- Keywords
- genome pathway sequence
- Links
- Homepage
- Publications
- 2024 Saccharomyces Genome Database: Advances in Genome Annotation, Expanded Biochemical Pathways, and Other Key Enhancements
- 2004 Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in Saccharomyces genome database pathways should match this regular expression:
^PWY\w{2}\-\d{3}$ - Example Local Unique Identifier
- PWY3O-214 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Saccharomyces genome database pathways should match this regular expression:
^sgd\.pathways:PWY\w{2}\-\d{3}$ - Example CURIE
- sgd.pathways:PWY3O-214
Contacts
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
SGD.PATHWAYS
|
|
Identifiers.org
|
miriam |
sgd.pathways
|
|
N2T
|
n2t |
sgd.pathways
|
|
Prefix Commons
|
prefixcommons |
sgd.pathways
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier PWY3O-214 is used to demonstrate the providers
available for Saccharomyces genome database pathways. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Saccharomyces genome database pathways | sgd.pathways |
http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=PWY3O-214 |
| Bioregistry | bioregistry |
https://bioregistry.io/sgd.pathways:PWY3O-214 |
| Identifiers.org | miriam |
https://identifiers.org/sgd.pathways:PWY3O-214 |
| Name-to-Thing | n2t |
https://n2t.net/sgd.pathways:PWY3O-214 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/sgd.pathways:PWY3O-214 |