The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility.

Prefix

reproduceme

Keywords

ontology

Version

1.1

Links

Homepage OWL

Contact

Sheeba Samuel   0000-0002-7981-8504

Pattern for Local Unique Identifiers

Missing LUI pattern

Example Local Unique Identifier

MicrobeamManipulation   Resolve

Example CURIE

reproduceme:MicrobeamManipulation

A summary of the relations in the Bioregistry schema can be found here.

In Collection

NFDI4Chem Collection

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier MicrobeamManipulation is used to demonstrate the providers available for REPRODUCE-ME Ontology. A guide for curating additional providers can be found here.