Registry Zebrafish anatomy and development ontology

ZFA description.

Prefix: zfa
Preferred Prefix: ZFA
Alternative Prefixes: ZFA_RETIRED
Keywords: anatomy developmental biology life science obo ontology zebrafish
Version: 2022-03-15
License: CC-BY-3.0
Links: Homepage Repository OBO OWL OBO JSON
Contact: Ceri Van Slyke 0000-0002-2244-7917 cerivs
Pattern for Local Unique Identifiers: Local identifiers in Zebrafish anatomy and development ontology should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0005926 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Zebrafish anatomy and development ontology should match this regular expression:
^zfa:\d{7}$
Example CURIE: zfa:0005926
Publications: 2014 The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio.

Ontology

Appears In (1) (bioregistry.schema:0000018 ): ZP

Metaregistry Zebrafish anatomy and development ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for zfa with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`ZFA`
BioContext	`biocontext`	`ZFA`
BioPortal	`bioportal`	`ZFA`
FAIRSharing	`fairsharing`	`FAIRsharing.s3r6sk`
OBO Foundry	`obofoundry`	`zfa`
OLS	`ols`	`zfa`
OntoBee	`ontobee`	`ZFA`
Prefix Commons	`prefixcommons`	`zfa`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE zfa:0005926 is used to demonstrate the provides available for zfa. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Zebrafish anatomy and development ontology	`zfa`	http://purl.obolibrary.org/obo/ZFA_0005926
Bioregistry	`bioregistry`	https://bioregistry.io/zfa:0005926
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/ZFA_0005926
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/zfa/terms?iri=http://purl.obolibrary.org/obo/ZFA_0005926
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/ZFA/?p=classes&conceptid=http://purl.obolibrary.org/obo/ZFA_0005926

Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code	Name	URL
`bio2rdf`	Bio2RDF	http://bio2rdf.org/zfa:0005926

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("ZFA_RETIRED")
'zfa'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("zfa")
{'ZFA_RETIRED'}

Get the version:

>>> import bioregistry as br
>>> br.get_version("zfa")
'2022-03-15'

Get the license:

>>> import bioregistry as br
>>> br.get_license("zfa")
'CC-BY-3.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("zfa")
'https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("zfa")
'https://github.com/cerivs/zebrafish-anatomical-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("zfa")
'http://purl.obolibrary.org/obo/zfa.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("zfa")
'http://purl.obolibrary.org/obo/zfa.owl'

Get the JSON download link:

>>> import bioregistry as br
>>> br.get_json_download("zfa")
'http://purl.obolibrary.org/obo/zfa.json'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("zfa")
'Ceri Van Slyke'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("zfa")
'van_slyke@zfin.org'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("zfa")
'cerivs'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("zfa")
'0000-0002-2244-7917'