A manually curated resource for the representation and annotation of metabolic pathways

Prefix

upa

Preferred Prefix

UPA

Alternative Prefixes

UPa unipathway.pathway unipathway

Keywords

obo ontology pathway

Version

2024-03-06

License

CC-BY-3.0

Links

Homepage Repository OBO OWL

Publications

2011 UniPathway: a resource for the exploration and annotation of metabolic pathways

Pattern for Local Unique Identifiers

Local identifiers in Unipathway should match this regular expression:
^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\d{5}$

Example Local Unique Identifier

UCR00513   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Unipathway should match this regular expression:
^UPA:(UCR|UCY|UER|ULS|UPA|UPC|UPX)\d{5}$

Example CURIE

UPA:UCR00513

Pattern for RDF URIs

http://purl.obolibrary.org/obo/UPA_$1

Example RDF URI

http://purl.obolibrary.org/obo/UPA_UCR00513

Contact

Anne Morgat   0000-0002-1216-2969   amorgat

A summary of the relations in the Bioregistry schema can be found here.

Depends On (1)

RO

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 11 mappings to external registries with 5 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier UCR00513 is used to demonstrate the providers available for Unipathway. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.