A manually curated resource for the representation and annotation of metabolic pathways

Prefix
upa
Preferred Prefix
UPA
Alternative Prefixes
UPa unipathway unipathway.pathway
Version
2018-12-12
License
CC BY 3.0
Links
Homepage Repository OBO OWL
Contact
Anne Morgat   0000-0002-1216-2969   amorgat
Pattern for Local Unique Identifiers

Local identifiers in Unipathway should match this regular expression:
^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\d{5}$

Example Local Unique Identifier
UCR00513   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Unipathway should match this regular expression:
^upa:(UCR|UCY|UER|ULS|UPA|UPC|UPX)\d{5}$

Example CURIE
upa:UCR00513
Publications
2011 UniPathway: a resource for the exploration and annotation of metabolic pathways.
Ontology
Depends On (1)
RO
Metaregistry Unipathway

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for upa with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL aberowl UPA
BioContext biocontext UNIPATHWAY
BioPortal Prefixes bioportal UPA
EDAM Ontology edam 2645
Gene Ontology Registry go UniPathway
OBO Foundry OBO Foundry logo obofoundry upa
Ontology Lookup Service Ontology Lookup Service logo ols upa
OntoBee ontobee UPA
Prefix Commons prefixcommons unipathway
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE upa:UCR00513 is used to demonstrate the provides available for upa. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Unipathway upa http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=UCR00513
Bioregistry bioregistry https://bioregistry.io/upa:UCR00513
OBO Foundry obofoundry http://purl.obolibrary.org/obo/UPA_UCR00513
Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/upa/terms?iri=http://purl.obolibrary.org/obo/UPA_UCR00513
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/UPA/?p=classes&conceptid=http://purl.obolibrary.org/obo/UPA_UCR00513