A manually curated resource for the representation and annotation of metabolic pathways

Prefix

upa

Preferred Prefix

UPA

Alternative Prefixes

unipathway.pathway UPa unipathway

Keywords

obo ontology pathway

Version

2024-03-06

License

CC-BY-3.0

Links

Homepage Repository OBO OWL

Contact

Anne Morgat   0000-0002-1216-2969   amorgat

Pattern for Local Unique Identifiers

Local identifiers in Unipathway should match this regular expression:
^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\d{5}$

Example Local Unique Identifier

UCR00513   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Unipathway should match this regular expression:
^UPA:(UCR|UCY|UER|ULS|UPA|UPC|UPX)\d{5}$

Example CURIE

UPA:UCR00513

Publications

2011 UniPathway: a resource for the exploration and annotation of metabolic pathways

A summary of the relations in the Bioregistry schema can be found here.

Depends On (1) (bioregistry.schema:0000017 )

RO

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for this resource with 4 unique external prefixes.

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/UPA_$1

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier UCR00513 is used to demonstrate the providers available for Unipathway. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.