Registry UCSC Genome Browser
The UCSC Genome Browser is an on-line, and downloadable, genome browser hosted by the University of California, Santa Cruz (UCSC).[2][3][4] It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations.
- Prefix
ucsc- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
- Missing LUI pattern
- Example Local Unique Identifier
- uc001rvw.5 Resolve
- Example CURIE
- ucsc:uc001rvw.5
- Publications
- 2019 The UCSC Genome Browser database: 2019 update.
- Contributors
-
- submitter Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt
Metaregistry UCSC Genome Browser
The metaregistry provides mappings between the Bioregistry and other registries. There are
3 mappings to external registries for ucsc with
3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
UCSC
|
|
UniProt
|
uniprot |
DB-0139
|
|
Wikidata
|
wikidata |
P2576
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
ucsc:uc001rvw.5
is used to demonstrate the provides available for
ucsc. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| UCSC Genome Browser | ucsc |
ftp://hgdownload.cse.ucsc.edu/goldenPath/uc001rvw.5 |
| Bioregistry | bioregistry |
https://bioregistry.io/ucsc:uc001rvw.5 |