SpBase, is designed to present the results of the genome sequencing project for the purple sea urchin. THe sequences and annotations emerging from this effort are organized in a database that provides the research community access to those data not normally presented through NCBI and other large databases.

Comment

This resource doesn't exist on the web anymore

Prefix
spbase
Keywords
dna genome rna
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers
Missing LUI pattern
Example Local Unique Identifier
SPU_000001   Resolve
Example CURIE
spbase:SPU_000001
Reviewer
Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt
Metaregistry SpBase

The metaregistry provides mappings between the Bioregistry and other registries. There are 2 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
Integbio Integbio logo integbio nbdc00686
Prefix Commons Prefix Commons logo prefixcommons spbase
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE spbase:SPU_000001 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
SpBase spbase http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=SPU_000001
Bioregistry bioregistry https://bioregistry.io/spbase:SPU_000001
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/spbase:SPU_000001