SpBase, is designed to present the results of the genome sequencing project for the purple sea urchin. THe sequences and annotations emerging from this effort are organized in a database that provides the research community access to those data not normally presented through NCBI and other large databases.
This resource doesn't exist on the web anymore
spbaseMappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 2 mappings to external registries with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
Integbio
|
integbio |
nbdc00686
|
|
|
Prefix Commons
|
prefixcommons |
spbase
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier SPU_000001 is used to demonstrate the providers
available for SpBase. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| SpBase | spbase |
http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=SPU_000001 |
| Bioregistry | bioregistry |
https://bioregistry.io/spbase:SPU_000001 |
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/spbase:SPU_000001 |