SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains.

Preferred Prefix
obo ontology
Homepage OWL
Adrien Coulet   0000-0002-1466-062X
Pattern for Local Unique Identifiers
Missing LUI pattern
Example Local Unique Identifier
Missing Example Local Unique Identifier
Metaregistry Suggested Ontology for Pharmacogenomics

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl SOPHARM
BioContext biocontext SOPHARM
BioPortal BioPortal Prefixes logo bioportal SOPHARM
OBO Foundry OBO Foundry logo obofoundry sopharm
RDF Information

When using this resource in RDF, the following URI format should be used:$1


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