The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort.
sbo
SBO
Local identifiers in Systems Biology Ontology should match this
regular expression:
^\d{7}$
Compact URIs (CURIEs) constructed from Systems Biology Ontology should match
this regular expression:
^sbo:\d{7}$
namespaceEmbeddedInLUI
as true.
This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known
as a banana)
and therefore look like a CURIE. For Systems Biology Ontology, the banana looks like
SBO:
.
Therefore, you may see local unique identifiers for this resource that look like
SBO:0000485
(instead of the canonical form 0000485
) and CURIEs for this resource that look like
sbo:SBO:0000485
(instead of the canonical form sbo:0000485
).
The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
The metaregistry provides mappings between the Bioregistry and other registries. There are
10 mappings to external registries for sbo
with
2 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
AberOWL
![]() |
aberowl |
SBO
|
|
BioContext | biocontext |
SBO
|
|
BioPortal
![]() |
bioportal |
SBO
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.s19src
|
|
Identifiers.org
![]() |
miriam |
sbo
|
|
N2T
![]() |
n2t |
sbo
|
|
OBO Foundry
![]() |
obofoundry |
sbo
|
|
OLS
![]() |
ols |
sbo
|
|
OntoBee
![]() |
ontobee |
SBO
|
|
Prefix Commons
|
prefixcommons |
sbo
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
sbo:0000485
is used to demonstrate the provides available for
sbo
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
biomodels |
BioModels | http://biomodels.net/SBO/SBO_0000485 |