Registry RiceNetDB Gene
RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
- Prefix
ricenetdb.gene- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in RiceNetDB Gene should match this regular expression:
^LOC\_Os\d{1,2}g\d{5}\.\d$ - Example Local Unique Identifier
- LOC_Os01g49190.1 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from RiceNetDB Gene should match this regular expression:
^ricenetdb\.gene:LOC\_Os\d{1,2}g\d{5}\.\d$ - Example CURIE
- ricenetdb.gene:LOC_Os01g49190.1
Metaregistry RiceNetDB Gene
The metaregistry provides mappings between the Bioregistry and other registries. There are
3 mappings to external registries for ricenetdb.gene with
1 unique external prefixes.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
RICENETDB.GENE
|
Identifiers.org
|
miriam |
ricenetdb.gene
|
Name-to-Thing
|
n2t |
ricenetdb.gene
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
ricenetdb.gene:LOC_Os01g49190.1
is used to demonstrate the provides available for
ricenetdb.gene. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.