RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
- Prefix
ricenetdb.gene- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in RiceNetDB Gene should match this regular expression:
^LOC\_Os\d{1,2}g\d{5}\.\d$ - Example Local Unique Identifier
- LOC_Os01g49190.1 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from RiceNetDB Gene should match this regular expression:
^ricenetdb\.gene:LOC\_Os\d{1,2}g\d{5}\.\d$ - Example CURIE
- ricenetdb.gene:LOC_Os01g49190.1
Metaregistry RiceNetDB Gene
The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
RICENETDB.GENE
|
|
Identifiers.org
|
miriam |
ricenetdb.gene
|
|
N2T
|
n2t |
ricenetdb.gene
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier LOC_Os01g49190.1 is used to demonstrate the providers
available for RiceNetDB Gene. A guide for curating additional providers can be found
here.