Registry Rice annotation Project database

Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Rice annotation Project database should match this regular expression:

Example Local Unique Identifier
Os01t0883800-02   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Rice annotation Project database should match this regular expression:

Example CURIE
Metaregistry Rice annotation Project database

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for rapdb.transcript with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
Gene Ontology Registry go RAP-DB logo miriam rapdb.transcript
National Center for Biotechnology Information Registry ncbi RAP-DB
Prefix Commons prefixcommons rapdb

Providers are various services that resolve CURIEs to URLs. The example CURIE rapdb.transcript:Os01t0883800-02 is used to demonstrate the provides available for rapdb.transcript. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Rice annotation Project database rapdb.transcript
Bioregistry bioregistry miriam