Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB.

Prefix

rapdb.transcript

Keywords

dna genome genome annotation rice transcript

Links

Homepage

Publications

2026 Rice Annotation Project Database (RAP-DB): Literature-Curated Gene Annotation and Integrated Omics Resources for Rice Functional Genomics and Molecular Breeding.

Pattern for Local Unique Identifiers

Local identifiers in Rice Annotation Project Database Transcript should match this regular expression:
^Os\d{2}t\d{7}-\d{2}$

Example Local Unique Identifier

Os01t0883800-02   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Rice Annotation Project Database Transcript should match this regular expression:
^rapdb\.transcript:Os\d{2}t\d{7}-\d{2}$

Example CURIE

rapdb.transcript:Os01t0883800-02

Contact

Yoshihiro Kawahara   0000-0002-9314-1632

Identifier Space Owner

The National Agriculture and Food Research Organization (NARO)

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier Os01t0883800-02 is used to demonstrate the providers available for Rice Annotation Project Database Transcript. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.