appears_in: []
contact:
  email: kawahara.yoshihiro177@naro.go.jp
  name: Yoshihiro Kawahara
  orcid: 0000-0002-9314-1632
depends_on: []
deprecated: false
description: Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa)
  annotation database established in 2004 upon the completion of the Oryza sativa
  ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome
  Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation,
  gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural
  research communities. This collection provides transcript information in RAP-DB.
example: Os01t0883800-02
example_extras: []
homepage: https://rapdb.dna.naro.go.jp
keywords:
- dna
- genome
- genome annotation
- rice
- transcript
mappings:
  go: RAP-DB
  miriam: rapdb.transcript
  ncbi: RAP-DB
  prefixcommons: rapdb
name: Rice Annotation Project Database Transcript
namespace_in_lui: false
owners:
- name: The National Agriculture and Food Research Organization (NARO)
  ror: 023v4bd62
pattern: ^Os\d{2}t\d{7}-\d{2}$
preferred_prefix: rapdb.transcript
prefix: rapdb.transcript
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/rapdb:$1
publications:
- doi: 10.1186/s12284-026-00924-6
  pubmed: '42201463'
  title: 'Rice Annotation Project Database (RAP-DB): Literature-Curated Gene Annotation
    and Integrated Omics Resources for Rice Functional Genomics and Molecular Breeding.'
  year: 2026
synonyms: []
uri_format: https://rapdb.dna.naro.go.jp/transcript/?name=$1
