Registry PseudoGene Deprecated

This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase.

Prefix: pseudogene
Alternative Prefixes: pseudogene.org
Keywords: gene genome/gene ontology sequence
Links: Homepage
Publications: https://bioregistry.io/pubmed:17099229

Identifier Standards

Pattern for Local Unique Identifiers: Missing LUI pattern
Example Local Unique Identifier: PGOHUM00000289843 Resolve
Example CURIE: pseudogene:PGOHUM00000289843

Contacts

Contact: Mark Gerstein 0000-0002-9746-3719
Contributors: submitter Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Mappings to External Registries

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 4 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
BioPortal	`bioportal`	`pseudo`
Integbio	`integbio`	`nbdc00178`
Prefix Commons	`prefixcommons`	`pseudogene`
Wikidata (E)	`wikidata.entity`	`Q7254809`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier PGOHUM00000289843 is used to demonstrate the providers available for PseudoGene. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
PseudoGene	`pseudogene`	https://bioregistry.io/pseudogene:PGOHUM00000289843
Bioregistry	`bioregistry`	https://bioregistry.io/pseudogene:PGOHUM00000289843

Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Provider Name	Provider Code	URL
Bio2RDF	`bio2rdf`	http://bio2rdf.org/pseudogene:PGOHUM00000289843

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("pseudogene.org")
'pseudogene'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("pseudogene")
{'pseudogene.org'}

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("pseudogene")
'PseudoGene'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("pseudogene")
'http://www.pseudogene.org'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("pseudogene")
'Mark Gerstein'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("pseudogene")
'mark@gersteinlab.org'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("pseudogene")
'0000-0002-9746-3719'