AmoebaDB is one of the databases that can be accessed through the EuPathDB (; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.

Alternative Prefixes
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in PlasmoDB should match this regular expression:

Example Local Unique Identifier
PF11_0344   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PlasmoDB should match this regular expression:

Example CURIE
2008 PlasmoDB: a functional genomic database for malaria parasites.
Metaregistry PlasmoDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for plasmodb with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PLASMODB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.g4n8sw
Gene Ontology Registry go PlasmoDB logo miriam plasmodb
Name-to-Thing Name-to-Thing logo n2t plasmodb
National Center for Biotechnology Information Registry ncbi ApiDB_PlasmoDB
Prefix Commons prefixcommons plasmodb
Registry of Research Data Repositories re3data r3d100011569

Providers are various services that resolve CURIEs to URLs. The example CURIE plasmodb:PF11_0344 is used to demonstrate the provides available for plasmodb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
PlasmoDB plasmodb
Bioregistry bioregistry miriam
Name-to-Thing n2t