Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Pathway Commons should match this regular expression:

Example Local Unique Identifier
485991   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Pathway Commons should match this regular expression:

Example CURIE
Metaregistry Pathway Commons

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for pathwaycommons with 2 unique external prefixes.

Registry Name Metaprefix External Prefix
BioContext biocontext PATHWAYCOMMONS logo miriam pathwaycommons
Name-to-Thing Name-to-Thing logo n2t pathwaycommons
Prefix Commons prefixcommons pathwaycommons
Registry of Research Data Repositories re3data r3d100012731
UniProt Cross-ref database uniprot PathwayCommons

Providers are various services that resolve CURIEs to URLs. The example CURIE pathwaycommons:485991 is used to demonstrate the provides available for pathwaycommons. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Pathway Commons pathwaycommons
Bioregistry bioregistry miriam
Name-to-Thing n2t