Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language.

Prefix

pathwaycommons

Keywords

pathway

Links

Homepage

Contact

Chris Sander   0000-0001-6059-6270   sanderlab

Pattern for Local Unique Identifiers

Local identifiers in Pathway Commons should match this regular expression:
^\d+$

Example Local Unique Identifier

485991   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Pathway Commons should match this regular expression:
^pathwaycommons:\d+$

Example CURIE

pathwaycommons:485991

Publications

• https://bioregistry.io/pubmed:31647099
• 2010 Pathway Commons, a web resource for biological pathway data

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 485991 is used to demonstrate the providers available for Pathway Commons. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.