Registry Ontology for Avida digital evolution platform

The Ontology for Avida (OntoAvida) project aims to develop an integrated vocabulary for the description of the most widely used computational approach for performing experimental evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment). The lack of a clearly defined vocabulary makes biologists feel reluctant to embrace the field of digital evolution. This unique ontology has the potential to change this picture overnight. OntoAvida was initially developed by https://fortunalab.org, the computational biology lab at the Doñana Biological Station (a research institute of the Spanish National Research Council based at Seville, Spain). Contributors to OntoAvida are expected to include members of the Digital Evolution Laboratory (https://devolab.org/) at Michigan State University (USA). More information can be found at https://obofoundry.org/ontology/ontoavida.html

Prefix: ontoavida
Preferred Prefix: ONTOAVIDA
Keywords: obo ontology
Version: 2022-03-15
License: CC-BY-4.0
Links: Homepage Repository OBO OWL
Contact: Miguel A. Fortuna 0000-0002-8374-1941 miguelfortuna
Pattern for Local Unique Identifiers: Local identifiers in Ontology for Avida digital evolution platform should match this regular expression:
^\d{8}$
Example Local Unique Identifier: 00000001 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Ontology for Avida digital evolution platform should match this regular expression:
^ontoavida:\d{8}$
Example CURIE: ontoavida:00000001

Ontology

Depends On (5) (bioregistry.schema:0000017 ): FBcv GSSO NCIT RO STATO

Metaregistry Ontology for Avida digital evolution platform

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for ontoavida with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`ONTOAVIDA`
BioPortal	`bioportal`	`ONTOAVIDA`
OBO Foundry	`obofoundry`	`ontoavida`
OLS	`ols`	`ontoavida`
OntoBee	`ontobee`	`ONTOAVIDA`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE ontoavida:00000001 is used to demonstrate the provides available for ontoavida. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Bioregistry	`bioregistry`	https://bioregistry.io/ontoavida:00000001
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/ONTOAVIDA_00000001
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/ontoavida/terms?iri=http://purl.obolibrary.org/obo/ONTOAVIDA_00000001
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/ONTOAVIDA/?p=classes&conceptid=http://purl.obolibrary.org/obo/ONTOAVIDA_00000001

Get the version:

>>> import bioregistry as br
>>> br.get_version("ontoavida")
'2022-03-15'

Get the license:

>>> import bioregistry as br
>>> br.get_license("ontoavida")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("ontoavida")
'https://gitlab.com/fortunalab/ontoavida'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("ontoavida")
'https://gitlab.com/fortunalab/ontoavida'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("ontoavida")
'http://purl.obolibrary.org/obo/ontoavida.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("ontoavida")
'http://purl.obolibrary.org/obo/ontoavida.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("ontoavida")
'Miguel A. Fortuna'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("ontoavida")
'fortuna@ebd.csic.es'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("ontoavida")
'miguelfortuna'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("ontoavida")
'0000-0002-8374-1941'