Bioregistry - FlyBase Controlled Vocabulary

Registry FlyBase Controlled Vocabulary

A miscellaneous ontology of terms used for curation in FlyBase, including the DPO.

Prefix: fbcv
Preferred Prefix: FBcv
Alternative Prefixes: FBcv
Version: 2022-06-09
License: CC BY 4.0
Links: Homepage Repository OBO OWL OBO JSON
Contact: Clare Pilgrim 0000-0002-1373-1705 Clare72
Pattern for Local Unique Identifiers: Local identifiers in FlyBase Controlled Vocabulary should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0000586 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from FlyBase Controlled Vocabulary should match this regular expression:
^fbcv:\d{7}$
Example CURIE: fbcv:0000586
Publications: 2013 The Drosophila phenotype ontology.

Ontology

Part Of: FlyBase
Has Part: DPO
Appears In (1): ONTOAVIDA

Metaregistry FlyBase Controlled Vocabulary

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for fbcv with 3 unique external prefixes.

Registry Name	Metaprefix	External Prefix
AberOWL	`aberowl`	`FBCV`
BioContext	`biocontext`	`FBcv`
BioPortal Prefixes	`bioportal`	`FB-CV`
FAIRSharing	`fairsharing`	`FAIRsharing.6tgyxf`
OBO Foundry	`obofoundry`	`fbcv`
Ontology Lookup Service	`ols`	`fbcv`
OntoBee	`ontobee`	`FBCV`
Prefix Commons	`prefixcommons`	`fbcv`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE fbcv:0000586 is used to demonstrate the provides available for fbcv. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
FlyBase Controlled Vocabulary	`fbcv`	http://purl.obolibrary.org/obo/FBcv_0000586
Bioregistry	`bioregistry`	https://bioregistry.io/fbcv:0000586
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/FBcv_0000586
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/fbcv/terms?iri=http://purl.obolibrary.org/obo/FBcv_0000586
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/FB-CV/?p=classes&conceptid=http://purl.obolibrary.org/obo/FBcv_0000586

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("FBcv")
'fbcv'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("fbcv")
{'FBcv'}

Get the version:

>>> import bioregistry as br
>>> br.get_version("fbcv")
'2022-06-09'

Get the license:

>>> import bioregistry as br
>>> br.get_license("fbcv")
'CC BY 4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("fbcv")
'http://purl.obolibrary.org/obo/fbcv'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("fbcv")
'https://github.com/FlyBase/flybase-controlled-vocabulary'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("fbcv")
'https://raw.githubusercontent.com/FlyBase/flybase-controlled-vocabulary/master/fbcv.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("fbcv")
'http://purl.obolibrary.org/obo/fbcv.owl'

Get the JSON download link:

>>> import bioregistry as br
>>> br.get_json_download("fbcv")
'http://purl.obolibrary.org/obo/fbcv.json'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("fbcv")
'Clare Pilgrim'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("fbcv")
'cp390@cam.ac.uk'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("fbcv")
'Clare72'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("fbcv")
'0000-0002-1373-1705'