Registry Ontology for genetic interval Deprecated

OGI formalized the genomic element by defining an upper class 'genetic interval'. The definition of 'genetic interval' is "the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture." Related paper: 1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology) Yu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf) Yu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF)

Prefix
ogi
Preferred Prefix
OGI
Alternative Prefixes
OGI.owl
Version
2.0
Links
Homepage OWL
Contact
Asiyah Yu Lin   0000-0002-5379-5359   linikujp
Pattern for Local Unique Identifiers

Local identifiers in Ontology for genetic interval should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0000019   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Ontology for genetic interval should match this regular expression:
^ogi:\d{7}$

Example CURIE
ogi:0000019
Metaregistry Ontology for genetic interval

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for ogi with 1 unique external prefixes.

Registry Name Metaprefix External Prefix
AberOWL aberowl OGI
BioContext biocontext OGI
BioPortal Prefixes bioportal OGI
OBO Foundry OBO Foundry logo obofoundry ogi
Ontology Lookup Service Ontology Lookup Service logo ols ogi
OntoBee ontobee OGI
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE ogi:0000019 is used to demonstrate the provides available for ogi. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Ontology for genetic interval ogi http://purl.obolibrary.org/obo/OGI_0000019
Bioregistry bioregistry https://bioregistry.io/ogi:0000019
OBO Foundry obofoundry http://purl.obolibrary.org/obo/OGI_0000019
Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/ogi/terms?iri=http://purl.obolibrary.org/obo/OGI_0000019
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/OGI/?p=classes&conceptid=http://purl.obolibrary.org/obo/OGI_0000019