OGI formalized the genomic element by defining an upper class 'genetic interval'. The definition of 'genetic interval' is "the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture." Related paper: 1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology) Yu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf) Yu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF)
ogi
OGI
Local identifiers in Ontology for genetic interval should match this
regular expression:
^\d{7}$
Compact URIs (CURIEs) constructed from Ontology for genetic interval should match
this regular expression:
^ogi:\d{7}$
The metaregistry provides mappings between the Bioregistry and other registries. There are
6 mappings to external registries for ogi
with
1 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
AberOWL
![]() |
aberowl |
OGI
|
|
BioContext | biocontext |
OGI
|
|
BioPortal
![]() |
bioportal |
OGI
|
|
OBO Foundry
![]() |
obofoundry |
ogi
|
|
OLS
![]() |
ols |
ogi
|
|
OntoBee
![]() |
ontobee |
OGI
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
ogi:0000019
is used to demonstrate the provides available for
ogi
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.