Registry Ontology for genetic interval

OGI formalized the genomic element by defining an upper class 'genetic interval'. The definition of 'genetic interval' is "the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture." Related paper: 1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 ( Yu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. ( Yu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (

Preferred Prefix
Homepage OWL
Missing Contact
Pattern for Local Unique Identifiers
Missing LUI pattern
Example Local Unique Identifier
0000019   Resolve
Pattern for CURIES
Could not construct CURIE pattern
Example CURIE

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for ogi.

Registry Name Metaprefix External Prefix
BioPortal Prefixes bioportal OGI
OBO Foundry obofoundry OGI
Ontology Lookup Service ols ogi
OntoBee ontobee OGI
Prefix Commons prefixcommons OGI

Providers are various services that resolve CURIEs to URLs. The example CURIE ogi:0000019 is used to demonstrate the provides available for ogi. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Ontology for genetic interval ogi
Bioregistry bioregistry
OBO Foundry obofoundry
Ontology Lookup Service ols
BioPortal Prefixes bioportal