OGI formalized the genomic element by defining an upper class 'genetic interval'. The definition of 'genetic interval' is "the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture." Related paper: 1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology) Yu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf) Yu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF)

Prefix

ogi

Preferred Prefix

OGI

Alternative Prefixes

OGI.owl

Keywords

obo ontology

Version

2.0

Links

Homepage OWL

Contact

Asiyah Yu Lin   0000-0002-5379-5359   linikujp

Pattern for Local Unique Identifiers

Local identifiers in Ontology for genetic interval should match this regular expression:
^\d{7}$

Example Local Unique Identifier

0000019   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Ontology for genetic interval should match this regular expression:
^OGI:\d{7}$

Example CURIE

OGI:0000019

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 1 unique external prefixes.

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/OGI_$1

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000019 is used to demonstrate the providers available for Ontology for genetic interval. A guide for curating additional providers can be found here.