Registry Ontology of Biological Attributes

A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO.

Prefix
oba
Preferred Prefix
OBA
Version
2022-08-03
License
CC0 1.0
Links
Homepage Repository OBO OWL OBO JSON
Contact
Chris Mungall   0000-0002-6601-2165   cmungall
Pattern for Local Unique Identifiers

Local identifiers in Ontology of Biological Attributes should match this regular expression:
^(VT)?\d{7}$

Example Local Unique Identifiers
0000001   Resolve
VT0003769   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Ontology of Biological Attributes should match this regular expression:
^oba:(VT)?\d{7}$

Example CURIEs
oba:0000001
oba:VT0003769
Ontology
Appears In (1)
FOVT
Metaregistry Ontology of Biological Attributes

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for oba with 2 unique external prefixes.

Registry Name Metaprefix External Prefix
AberOWL aberowl OBA
BioContext biocontext OBA
BioPortal Prefixes bioportal OBA
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.mp0rwf
OBO Foundry OBO Foundry logo obofoundry oba
Ontology Lookup Service Ontology Lookup Service logo ols oba
OntoBee ontobee OBA
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE oba:0000001 is used to demonstrate the provides available for oba. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Ontology of Biological Attributes oba http://purl.obolibrary.org/obo/OBA_0000001
Bioregistry bioregistry https://bioregistry.io/oba:0000001
OBO Foundry obofoundry http://purl.obolibrary.org/obo/OBA_0000001
Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/oba/terms?iri=http://purl.obolibrary.org/obo/OBA_0000001
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/OBA/?p=classes&conceptid=http://purl.obolibrary.org/obo/OBA_0000001