Registry Minimum Anformation About a Phylogenetic Analysis Ontology

The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies. This ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA.

Prefix
miapa
Preferred Prefix
MIAPA
Version
2017-05-09
License
CC0 1.0
Links
Homepage Repository OWL
Contact
Hilmar Lapp   0000-0001-9107-0714   hlapp
Pattern for Local Unique Identifiers

Local identifiers in Minimum Anformation About a Phylogenetic Analysis Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0000010   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Minimum Anformation About a Phylogenetic Analysis Ontology should match this regular expression:
^miapa:\d{7}$

Example CURIE
miapa:0000010
Publications
Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)
Metaregistry Minimum Anformation About a Phylogenetic Analysis Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for miapa with 2 unique external prefixes.

Registry Name Metaprefix External Prefix
AberOWL aberowl MIAPA
BioContext biocontext MIAPA
BioPortal Prefixes bioportal MIAPA
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.ca48xs
OBO Foundry OBO Foundry logo obofoundry miapa
Ontology Lookup Service Ontology Lookup Service logo ols miapa
OntoBee ontobee MIAPA
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE miapa:0000010 is used to demonstrate the provides available for miapa. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Minimum Anformation About a Phylogenetic Analysis Ontology miapa http://purl.obolibrary.org/obo/MIAPA_0000010
Bioregistry bioregistry https://bioregistry.io/miapa:0000010
OBO Foundry obofoundry http://purl.obolibrary.org/obo/MIAPA_0000010
Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/miapa/terms?iri=http://purl.obolibrary.org/obo/MIAPA_0000010
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/MIAPA/?p=classes&conceptid=http://purl.obolibrary.org/obo/MIAPA_0000010