The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.
mgi
MGI
Local identifiers in Mouse Genome Informatics should match this
regular expression:
^\d+$
Compact URIs (CURIEs) constructed from Mouse Genome Informatics should match
this regular expression:
^mgi:\d+$
namespaceEmbeddedInLUI
as true. The actual
part that gets prefixed before the local unique identifier regex,
otherwise known as the banana, is
MGI:
.
Therefore, you might see local unique identifiers written out as CURIEs.
The metaregistry provides mappings between the Bioregistry and other registries. There are
12 mappings to external registries for mgi
with
6 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
MGI
|
|
Cellosaurus Registry | cellosaurus |
MGI
|
|
EDAM Ontology | edam |
3274
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.fcwyhz
|
|
Gene Ontology Registry | go |
MGI
|
|
Identifiers.org
![]() |
miriam |
mgi
|
|
Name-to-Thing
![]() |
n2t |
mgi
|
|
National Center for Biotechnology Information Registry | ncbi |
MGI
|
|
Prefix Commons | prefixcommons |
mgi
|
|
Registry of Research Data Repositories | re3data |
r3d100010266
|
|
UniProt Cross-ref database | uniprot |
DB-0060
|
|
Wikidata Property
|
wikidata |
P671
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
mgi:6017782
is used to demonstrate the provides available for
mgi
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
Mouse Genome Informatics | mgi |
http://www.informatics.jax.org/accession/MGI:6017782 |
Bioregistry | bioregistry |
https://bioregistry.io/mgi:6017782 |
Identifiers.org | miriam |
https://identifiers.org/MGI:6017782 |
Name-to-Thing | n2t |
https://n2t.net/mgi:6017782 |
None | agr |
https://www.alliancegenome.org/gene/MGI:6017782 |
None | mgi.marker |
http://www.informatics.jax.org/marker/MGI:6017782 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
agr |
MGI through the Alliance of Genome Resources | https://www.alliancegenome.org/gene/MGI:6017782 |
mgi.marker |
MGI Marker | http://www.informatics.jax.org/marker/MGI:6017782 |