The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.

Preferred Prefix
Alternative Prefixes
animal model blast data analysis service expression function gene gene expression genetics genome genotype gold standard human disease human health image life science model molecular neuroanatomy resource ontology and terminology orthology pathology pathway phenotype recombinase sequence single nucleotide polymorphism strain tumor
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Mouse Genome Informatics should match this regular expression:

Example Local Unique Identifier
6017782   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Mouse Genome Informatics should match this regular expression:

Example CURIE
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource annotates the namespaceEmbeddedInLUI as true. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For Mouse Genome Informatics, the banana looks like MGI:. Therefore, you may see local unique identifiers for this resource that look like MGI:6017782 (instead of the canonical form 6017782) and CURIEs for this resource that look like MGI:MGI:6017782 (instead of the canonical form MGI:6017782). The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.

A summary of the relations in the Bioregistry schema can be found here.

In Collection
Global Biodata Coalition - Global Core Biodata Resources
Metaregistry Mouse Genome Informatics

The metaregistry provides mappings between the Bioregistry and other registries. There are 14 mappings to external registries for this resource with 7 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext MGI
Cellosaurus Cellosaurus Registry logo cellosaurus MGI
EDAM EDAM Ontology logo edam 3274
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.fcwyhz
GO Gene Ontology Registry logo go MGI
Integbio Integbio logo integbio nbdc00568 logo miriam mgi
N2T Name-to-Thing logo n2t mgi
NCBI National Center for Biotechnology Information Registry logo ncbi MGI
Prefix Commons Prefix Commons logo prefixcommons mgi
re3data Registry of Research Data Repositories logo re3data r3d100010266
RRID Research Resource Identifiers logo rrid MGI
UniProt UniProt Cross-ref database logo uniprot DB-0060
Wikidata Wikidata Property logo wikidata P671

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 6017782 is used to demonstrate the providers available for Mouse Genome Informatics. A guide for curating additional providers can be found here.

Name Metaprefix URI
Mouse Genome Informatics mgi
Bioregistry bioregistry miriam
Name-to-Thing n2t
Research Resource Identifiers rrid
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
agr MGI through the Alliance of Genome Resources
bio2rdf Bio2RDF
mgi.marker MGI Marker