A resource for exploring metabolism, starting with a set of of community-curated genome-scale metabolic models of human and model organisms, enriched with pathway maps and other tools for easy browsing and analysis.
- Prefix
metatlas- Keywords
- chemistry metabolites reactions
- Links
- Homepage Request Discussion
- Contact
- Mihail Anton 0000-0002-7753-9042 mihai-sysbio
- Pattern for Local Unique Identifiers
-
Local identifiers in Metabolic Atlas should match this regular expression:
^(MAM\d{5}\w)|(MAR\d{5})$ - Example Local Unique Identifiers
-
MAM01234c
Resolve
MAR11851 Resolve - Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Metabolic Atlas should match this regular expression:
^metatlas:(MAM\d{5}\w)|(MAR\d{5})$ - Example CURIEs
-
metatlas:MAM01234c
metatlas:MAR11851 - Contributors
-
- submitter Mihail Anton 0000-0002-7753-9042 mihai-sysbio
- Reviewer
- Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt
Ontology
A summary of the relations in the Bioregistry schema can be found here.
-
Has Parts (
bfo:0000051) - metatlas.metabolite metatlas.reaction
Metaregistry Metabolic Atlas
The metaregistry provides mappings between the Bioregistry and other registries. There are 1 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
Identifiers.org
|
miriam |
metatlas
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
metatlas:MAM01234c
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| Metabolic Atlas | metatlas |
https://metabolicatlas.org/identifier/MetabolicAtlas/MAM01234c |
| Bioregistry | bioregistry |
https://bioregistry.io/metatlas:MAM01234c |
| Identifiers.org | miriam |
https://identifiers.org/metatlas:MAM01234c |