ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available.

gene life science sequence
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Insertion sequence elements database should match this regular expression:

Example Local Unique Identifier
ISA1083-2   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Insertion sequence elements database should match this regular expression:

Example CURIE
2006 ISfinder: the reference centre for bacterial insertion sequences
Metaregistry Insertion sequence elements database

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext ISFINDER
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.xhpc3h logo miriam isfinder
N2T Name-to-Thing logo n2t isfinder
NCBI National Center for Biotechnology Information Registry logo ncbi ISFinder
Prefix Commons Prefix Commons logo prefixcommons isfinder

Providers are various services that resolve CURIEs to URLs. The example CURIE isfinder:ISA1083-2 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Insertion sequence elements database isfinder
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF