ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available.

gene life science sequence
Patricia Siguier   0000-0003-1620-6495
Pattern for Local Unique Identifiers

Local identifiers in Insertion sequence elements database should match this regular expression:

Example Local Unique Identifier
ISA1083-2   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Insertion sequence elements database should match this regular expression:

Example CURIE
2006 ISfinder: the reference centre for bacterial insertion sequences
Metaregistry Insertion sequence elements database

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext ISFINDER
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.xhpc3h
Integbio Integbio logo integbio nbdc00510 logo miriam isfinder
N2T Name-to-Thing logo n2t isfinder
NCBI National Center for Biotechnology Information Registry logo ncbi ISFinder
Prefix Commons Prefix Commons logo prefixcommons isfinder

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier ISA1083-2 is used to demonstrate the providers available for Insertion sequence elements database. A guide for curating additional providers can be found here.

Name Metaprefix URI
Insertion sequence elements database isfinder
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF