appears_in: []
contact:
  email: alan.bridge@isb-sib.ch
  name: Alan Bridge
  orcid: 0000-0003-2148-9135
depends_on: []
deprecated: false
description: HAMAP is a system that identifies and semi-automatically annotates proteins
  that are part of well-conserved and orthologous microbial families or subfamilies.
  These are used to build rules which are used to propagate annotations to member
  bacterial, archaeal and plastid-encoded protein entries.
example: MF_01400
homepage: https://hamap.expasy.org/
keywords:
- life science
- protein
mappings:
  biocontext: HAMAP
  edam: '2766'
  fairsharing: FAIRsharing.63m4ss
  go: HAMAP
  miriam: hamap
  n2t: hamap
  prefixcommons: hamap
  uniprot: DB-0041
name: High-quality Automated and Manual Annotation of microbial Proteomes
namespace_in_lui: false
pattern: ^MF_\d+$
preferred_prefix: hamap
prefix: hamap
providers:
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/hamap:$1
publications:
- doi: 10.1093/nar/gku1002
  pmc: PMC4383873
  pubmed: '25348399'
  title: 'HAMAP in 2015: updates to the protein family classification and annotation
    system'
  year: 2014
- doi: 10.1093/nar/gks1157
  pmc: PMC3531088
  pubmed: '23193261'
  title: HAMAP in 2013, new developments in the protein family classification and
    annotation system
  year: 2012
synonyms: []
uri_format: https://hamap.expasy.org/unirule/$1
