Registry Glycan Naming and Subsumption Ontology

An ontology for glycans based on GlyTouCan, but organized by subsumption.

Prefix: gno
Preferred Prefix: GNO
Alternative Prefixes: gnome
Keywords: obo ontology
Version: 1.10.0
License: CC-BY-4.0
Links: Homepage Repository OBO OWL OBO JSON
Contact: Nathan Edwards 0000-0001-5168-3196 edwardsnj
Pattern for Local Unique Identifiers: Local identifiers in Glycan Naming and Subsumption Ontology should match this regular expression:
^(\d{8}|(\w+\d+\w+))$
Example Local Unique Identifiers: 10004892 Resolve
G99373GG Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Glycan Naming and Subsumption Ontology should match this regular expression:
^gno:(\d{8}|(\w+\d+\w+))$
Example CURIEs: gno:10004892
gno:G99373GG
Publications: 2021 GNOme - Glycan Naming and Subsumption Ontology

Metaregistry Glycan Naming and Subsumption Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for gno with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`GNO`
BioPortal	`bioportal`	`GNO`
OBO Foundry	`obofoundry`	`gno`
OLS	`ols`	`gno`
OntoBee	`ontobee`	`GNO`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE gno:10004892 is used to demonstrate the provides available for gno. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Bioregistry	`bioregistry`	https://bioregistry.io/gno:10004892
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/GNO_10004892
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/gno/terms?iri=http://purl.obolibrary.org/obo/GNO_10004892
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/GNO/?p=classes&conceptid=http://purl.obolibrary.org/obo/GNO_10004892

Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code	Name	URL
`gno.composition`	GNOme Composition Browser	https://gnome.glyomics.org/CompositionBrowser.html?focus=10004892
`gno.structure`	GNOme Structure Viewer	https://gnome.glyomics.org/StructureBrowser.html?focus=10004892

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("gnome")
'gno'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("gno")
{'gnome'}

Get the version:

>>> import bioregistry as br
>>> br.get_version("gno")
'1.10.0'

Get the license:

>>> import bioregistry as br
>>> br.get_license("gno")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("gno")
'https://gnome.glyomics.org/'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("gno")
'https://github.com/glygen-glycan-data/GNOme'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("gno")
'http://purl.obolibrary.org/obo/gno.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("gno")
'http://purl.obolibrary.org/obo/gno.owl'

Get the JSON download link:

>>> import bioregistry as br
>>> br.get_json_download("gno")
'http://purl.obolibrary.org/obo/gno.json'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("gno")
'Nathan Edwards'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("gno")
'nje5@georgetown.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("gno")
'edwardsnj'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("gno")
'0000-0001-5168-3196'