Registry Glycan Naming and Subsumption Ontology

An ontology for glycans based on GlyTouCan, but organized by subsumption.

Prefix
gno
Preferred Prefix
GNO
Alternative Prefixes
gnome
Version
1.10.0
License
CC BY 4.0
Links
Homepage Repository OBO OWL OBO JSON
Contact
Nathan Edwards   0000-0001-5168-3196   edwardsnj
Pattern for Local Unique Identifiers

Local identifiers in Glycan Naming and Subsumption Ontology should match this regular expression:
^(\d{8}|(\w+\d+\w+))$

Example Local Unique Identifiers
10004892   Resolve
G99373GG   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Glycan Naming and Subsumption Ontology should match this regular expression:
^gno:(\d{8}|(\w+\d+\w+))$

Example CURIEs
gno:10004892
gno:G99373GG
Publications
GNOme - Glycan Naming and Subsumption Ontology
Metaregistry Glycan Naming and Subsumption Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for gno with 1 unique external prefixes.

Registry Name Metaprefix External Prefix
AberOWL aberowl GNO
BioPortal Prefixes bioportal GNO
OBO Foundry OBO Foundry logo obofoundry gno
Ontology Lookup Service Ontology Lookup Service logo ols gno
OntoBee ontobee GNO
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE gno:10004892 is used to demonstrate the provides available for gno. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Bioregistry bioregistry https://bioregistry.io/gno:10004892
OBO Foundry obofoundry http://purl.obolibrary.org/obo/GNO_10004892
Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/gno/terms?iri=http://purl.obolibrary.org/obo/GNO_10004892
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/GNO/?p=classes&conceptid=http://purl.obolibrary.org/obo/GNO_10004892
None gno.composition https://gnome.glyomics.org/CompositionBrowser.html?focus=10004892
None gno.structure https://gnome.glyomics.org/StructureBrowser.html?focus=10004892
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
gno.composition GNOme Composition Browser https://gnome.glyomics.org/CompositionBrowser.html?focus=10004892
gno.structure GNOme Structure Viewer https://gnome.glyomics.org/StructureBrowser.html?focus=10004892