GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links.

life science molecules small molecules structure
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in GlycomeDB should match this regular expression:

Example Local Unique Identifier
G77500AY   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from GlycomeDB should match this regular expression:

Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

Has URI collision with (bioregistry.schema:0000016 )

This resource shares one or more URI format strings with glytoucan .

Therefore, when generating an extended prefix map, glycomedb, its CURIE prefix synonyms, and its URI prefix synonyms are merged into the record for glytoucan . If you believe that these are two distinct semantic spaces and should not be merged, please open a new issue on the Bioregistry issue tracker for discussion.

Metaregistry GlycomeDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext GLYCOMEDB
EDAM EDAM Ontology logo edam 2664
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.k5k0yh
Integbio Integbio logo integbio nbdc00899 logo miriam glycomedb
N2T Name-to-Thing logo n2t glycomedb
Prefix Commons Prefix Commons logo prefixcommons glycomedb
re3data Registry of Research Data Repositories logo re3data r3d100011527

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier G77500AY is used to demonstrate the providers available for GlycomeDB. A guide for curating additional providers can be found here.

Name Metaprefix URI
GlycomeDB glycomedb
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF