GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products.

expression genome life science nucleotide sequence
sébastien Aubourg   0000-0002-0695-4767
Pattern for Local Unique Identifiers

Local identifiers in GeneFarm should match this regular expression:

Example Local Unique Identifier
4892   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from GeneFarm should match this regular expression:

Example CURIE
2005 GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts
Metaregistry GeneFarm

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext GENEFARM
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.2mayq0 logo miriam genefarm
N2T Name-to-Thing logo n2t genefarm
Prefix Commons Prefix Commons logo prefixcommons genefarm

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 4892 is used to demonstrate the providers available for GeneFarm. A guide for curating additional providers can be found here.

Name Metaprefix URI
GeneFarm genefarm
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF