It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources
- Prefix
faldo- Preferred Prefix
faldo- Keywords
- binding site gene feature genetics geography nucleic acid sequence ontology sequence annotation sequence feature
- Links
- Homepage Repository OWL
- Contact
- FALDO group
- Pattern for Local Unique Identifiers
- Missing LUI pattern
- Example Local Unique Identifier
- ForwardStrandPosition Resolve
- Example CURIE
- faldo:ForwardStrandPosition
- Publications
- 2016 FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation
- Contributors
-
- submitter Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection
- Semantic Web Context
Metaregistry Feature Annotation Location Description Ontology
The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
AberOWL
|
aberowl |
FALDO
|
|
AgroPortal
|
agroportal |
FALDO
|
|
| BioContext | biocontext |
faldo
|
|
BioPortal
|
bioportal |
FALDO
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.haxp7g
|
|
LOV
|
lov |
faldo
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier ForwardStrandPosition is used to demonstrate the providers
available for Feature Annotation Location Description Ontology . Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.