Registry Feature Annotation Location Description Ontology
It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources
- Prefix
faldo- Keywords
- genetics ontology
- Links
- Homepage Repository OWL
- Contact
- FALDO group
- Pattern for Local Unique Identifiers
- Missing LUI pattern
- Example Local Unique Identifier
- ForwardStrandPosition Resolve
- Example CURIE
- faldo:ForwardStrandPosition
- Publications
- 2016 FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.
- Contributors
-
- submitter Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt
Metaregistry Feature Annotation Location Description Ontology
The metaregistry provides mappings between the Bioregistry and other registries. There are
5 mappings to external registries for faldo with
2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
AberOWL
|
aberowl |
FALDO
|
|
AgroPortal
|
agroportal |
FALDO
|
|
| BioContext | biocontext |
faldo
|
|
BioPortal
|
bioportal |
FALDO
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.haxp7g
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
faldo:ForwardStrandPosition
is used to demonstrate the provides available for
faldo. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.