The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available.

Prefix
eupath
Preferred Prefix
EUPATH
Version
2022-02-15
Links
Homepage Repository OWL
Contact
Jie Zheng   0000-0002-2999-0103   zhengj2007
Pattern for Local Unique Identifiers

Local identifiers in VEuPathDB ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0010316   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from VEuPathDB ontology should match this regular expression:
^EUPATH:\d{7}$

Example CURIE
EUPATH:0010316
Ontology
Appears In
SCDO
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for eupath.

Registry Name Metaprefix External Prefix
BioPortal Prefixes bioportal EUPATH
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.9rhr9j
OBO Foundry OBO Foundry logo obofoundry EUPATH
Ontology Lookup Service Ontology Lookup Service logo ols eupath
OntoBee ontobee EUPATH
Prefix Commons prefixcommons EUPATH
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE eupath:0010316 is used to demonstrate the provides available for eupath. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
VEuPathDB ontology eupath http://purl.obolibrary.org/obo/EUPATH_0010316
Bioregistry bioregistry https://bioregistry.io/eupath:0010316
OBO Foundry obofoundry http://purl.obolibrary.org/obo/EUPATH_0010316
Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/eupath/terms?iri=http://purl.obolibrary.org/obo/EUPATH_0010316
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/EUPATH/?p=classes&conceptid=http://purl.obolibrary.org/obo/EUPATH_0010316