Registry VEuPathDB ontology
The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available.
- Prefix
eupath- Preferred Prefix
EUPATH- Keywords
- biomedical science epidemiology functional genomics obo ontology population genetics
- Version
- 2023-05-30
- License
- CC-BY-4.0
- Links
- Homepage Repository OWL
- Contact
- Jie Zheng 0000-0002-2999-0103 zhengj2007
- Pattern for Local Unique Identifiers
-
Local identifiers in VEuPathDB ontology should match this regular expression:
^\d{7}$ - Example Local Unique Identifier
- 0010316 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from VEuPathDB ontology should match this regular expression:
^EUPATH:\d{7}$ - Example CURIE
- EUPATH:0010316
- Publications
- 2016 Malaria study data integration and information retrieval based on OBO Foundry ontologies
Ontology
-
Appears In (1) (
bioregistry.schema:0000018) - SCDO
- In Collection
- Global Biodata Coalition - Global Core Biodata Resources
Metaregistry VEuPathDB ontology
The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
AberOWL
|
aberowl |
EUPATH
|
|
| BioContext | biocontext |
EUPATH
|
|
BioPortal
|
bioportal |
EUPATH
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.9rhr9j
|
|
OBO Foundry
|
obofoundry |
eupath
|
|
OLS
|
ols |
eupath
|
|
OntoBee
|
ontobee |
EUPATH
|
RDF Information
When using this resource in RDF, the following URI format should be used:
http://purl.obolibrary.org/obo/EUPATH_$1
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
EUPATH:0010316
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.